Metabolic conditions affect the developmental tempo of most animal species. Consequently, developmental gene regulatory networks (GRNs) must faithfully adjust their dynamics to a variable time scale. We find evidence that weak repressors of gene expression provide the necessary coupling between GRN output and cellular metabolism. Using a mathematical model that...
Advances in biosensor engineering have enabled the design of programmable molecular systems to detect a range of pathogens, nucleic acids, and chemicals. Here, we engineer and field-test a biosensor for fluoride, a major groundwater contaminant of global concern. The sensor consists of a cell-free system containing a DNA template that...
There is growing evidence that growth with invasive species influences the traits of co-occurring native plants over multiple generations. Some studies indicate that these experienced populations perform better in the presence of the invasive species that led to the trait changes. These experienced populations could serve as source material for...
Soil texture has important ramifications on the shape and size of roots as well as impacting how much water is taken up and the distribution of nutrients in the soil. These factors lead to differences in growth characteristics and plant performance. However, what traits and how the plant responds to...
Understanding how root traits vary within a species and how traits respond to heterogeneous environments, can provide important insight into functional plant attributes that influence plant survival in competitive environments. Selecting plant material with root traits that will support its survival in heterogenous environments may help improve the outcomes of...
Restoration practitioners have many seed material choices when restoring plant communities, and for some species, cultivars may be the most affordable and accessible material available. However, the process of plant selection and commercial seed production can limit trait variability critical to survival and persistence in heterogeneous environments. Several studies have...
Recent advances in cell-free gene expression (CFE) systems have enabled their use for a host of synthetic biology applications, particularly for rapid prototyping of genetic circuits and biosensors. Despite the proliferation of cell-free protein synthesis platforms, the large number of currently existing protocols for making CFE extracts muddles the collective...
A longstanding goal of synthetic biology has been the programmable control of cellular functions. Central to this is the creation of versatile regulatory toolsets that allow for programmable control of gene expression. Of the many regulatory molecules available, RNA regulators offer the intriguing possibility of de novo design – allowing...